[General] input_fofn = input.fofn input_type = raw openending = True length_cutoff = 10000 length_cutoff_pr = 8000 sge_option_da = -pe smp 5 -q bigmem sge_option_la = -pe smp 20 -q bigmem sge_option_pda = -pe smp 6 -q bigmem sge_option_pla = -pe smp 16 -q bigmem sge_option_fc = -pe smp 24 -q bigmem sge_option_cns = -pe smp 8 -q bigmem pa_concurrent_jobs = 96 cns_concurrent_jobs = 96 ovlp_concurrent_jobs = 96 pa_HPCdaligner_option = -v -dal128 -t16 -M32 -e.70 -l4800 -s100 -k18 -h480 -w8 -H15000 ovlp_HPCdaligner_option = -v -dal128 -t32 -M32 -h1024 -e.96 -l2400 -s100 -k24 -H15000 pa_DBsplit_option = -x500 -s400 ovlp_DBsplit_option = -s400 falcon_sense_option = --output_multi --output_dformat --min_idt 0.70 --min_cov 2 --max_n_read 200 --n_core 8 falcon_sense_skip_contained = True overlap_filtering_setting = --max_diff 100 --max_cov 100 --min_cov 2 --n_core 12