[General] input_fofn = input.fofn input_type = raw #openending = True length_cutoff = -1 genome_size = 1800000000 seed_coverage = 30 length_cutoff_pr = 1000 sge_option_da = -pe smp 5 -q bigmem sge_option_la = -pe smp 20 -q bigmem sge_option_pda = -pe smp 6 -q bigmem sge_option_pla = -pe smp 16 -q bigmem sge_option_fc = -pe smp 24 -q bigmem sge_option_cns = -pe smp 12 -q bigmem pa_concurrent_jobs = 96 cns_concurrent_jobs = 96 ovlp_concurrent_jobs = 96 pa_HPCdaligner_option = -v -B128 -t16 -M32 -e.70 -l6400 -s100 -k18 -h480 -w8 ovlp_HPCdaligner_option = -v -B128 -M32 -h1024 -e.96 -l2400 -s100 -k24 pa_DBsplit_option = -x500 -s400 ovlp_DBsplit_option = -s400 falcon_sense_option = --output_multi --min_idt 0.70 --min_cov 2 --max_n_read 200 --n_core 8 falcon_sense_skip_contained = True overlap_filtering_setting = --max_diff 100 --max_cov 100 --min_cov 2 --n_core 12